GWASinspector: Comprehensive, efficient and easy to use quality control of genome-wide association study results

Tools for (automated and manual) quality control of the results of Genome Wide Association Studies

Description

When evaluating the results of a genome-wide association study (GWAS), it is important to perform a quality control to ensure that the results are valid, complete, correctly formatted, and, in case of meta-analysis, consistent with other studies that have applied the same analysis. This package was developed to facilitate and streamline this process and provide the user with a comprehensive report.

Checkout the manual for detail information.

Installation

Our package is now avaialble from CRAN repository. You can simply run the below command in R to get the latest version.

Allele frequency standard references

• HapMap rds sqlite(gzipped)
• 1000Genome study (EUR super-population) sqlite(gzipped)

Effect-size references

• SDNN rds file
• RMSSD rds file
• HF rds file

Requirements

R 3.2 or higher

License

GWASinspector is licensed under the GNU General Public License, version 3.

Copyright

Copyright © 2019 by Alireza Ani.

Disclaimer: We hope that GWASinspector will be of significant help in future researches, however, it is published WITHOUT ANY WARRANTY.